The detailed information of tRNA gene sequence


Sequence ID>C181002272
Genome IDAP017572
Search identical group
Phylum/ClassAlphaproteobacteria
SpeciesRickettsia japonica DT-1 [AP017572]
Start position on genome 1059289
End posion on genome 1059380
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
ggccataacc
tRNA gene sequence 
GGAGAGATGGCCGAGTGGCCGAAGGCGGCGGTTTGCTAAACCGTTATACGGGTCATACCG
TATCGAGGGTTCGAATCCCTCTCTCTCCGCCA
Downstream region at tRNA end position 
gtctgtacag
Secondary structure (Cloverleaf model)
>C181002272	Ser	GCT
                   c      GCCA gtctgtacag
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     C T C C C     A
      T G A        G      | | | | |     G
    G       G C C G       G A G G G     C
    G         | | |                 T T
    C       A G G C
      C G A        G     TATACGGGTCATACCGTATC
                    G + T
                    C - G
                    G - C
                    G - C
                    T - A
                  T       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.-

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