The detailed information of tRNA gene sequence


Sequence ID>C181002589
Genome IDAP017602
Search identical group
Phylum/ClassAlphaproteobacteria
SpeciesRickettsia japonica YH_M [AP017602]
Start position on genome 181498
End posion on genome 181573
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
aaaatatgat
tRNA gene sequence 
AGGAGTGTAGCTCAATTGGTAGAGCGCCGGTCTCCAAAACCGGAGGTTGCGGGTTCGATA
CCTGTCGCTCCTGCCA
Downstream region at tRNA end position 
ttataggctt
Secondary structure (Cloverleaf model)
>C181002589	Trp	CCA
                   t      GCCA ttataggctt
                     A - T
                     G - C
                     G - C
                     A - T
                     G - C
                     T + G
                     G - C          A T
                    T     T G T C C     A
      T A A        A      + | + | |     G
    T       C T C G       G C G G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     AGGTT
                    C - G
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    C C A
Intron
Comment/Decision
Genome/Seq. Info.-

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