The detailed information of tRNA gene sequence


Sequence ID>C181109103
Genome IDCP024938
Search identical group
Phylum/ClassBetaproteobacteria
SpeciesParaburkholderia hospita mHSR1 [CP024937, CP024938, CP024939]
Start position on genome 1649587
End posion on genome 1649682
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
aggcgtcaac
tRNA gene sequence 
GGAAGGCATTCGTATCTGGTGGTGCGGCTGGGCTTCAAACCCAGTAGGGGGTGTCAGCCA
CTCTCTGGTCGGTTCGACTCCGGCTGCCTTCCGCCA
Downstream region at tRNA end position 
caaggctttt
Secondary structure (Cloverleaf model)
>C181109103	SeC	TCA
                   c      GCCA caaggctttt
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     G - C
                     C - G
                     A - T          T C
                    T     C G G C C     A
      T C T        T      | + | | |     G
    G       A T G C       G T C G G     C
    G       | + | |                 T T
    T       T G C G
      G G          G     TAGGGGGTGTCAGCCACTCTCTG
                    C - G
                    T - A
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.-

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