The detailed information of tRNA gene sequence


Sequence ID>C181159390
Genome IDCP027773
Search identical group
Phylum/ClassBetaproteobacteria
SpeciesVariovorax sp. PMC12 [CP027773, CP027774]
Start position on genome 5404851
End posion on genome 5404757
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
cagcgttcat
tRNA gene sequence 
GGGAGGGGATCGTCCCTGGTGGGGCGGCCGGGCTTCAAACCCGGTTGGTGGCGCCAGTCG
TCGCCGGGAAGGTTCGACTCCTTCCCCCTTCCGCCg
Downstream region at tRNA end position 
tctttatctt
Secondary structure (Cloverleaf model)
>C181159390	SeC	TCA
                   t      GCCg tctttatctt
                     G - C
                     G - C
                     G + T
                     A - T
                     G - C
                     G - C
                     G - C
                     G - C          T C
                    A     C T T C C     A
      T C C        T      | | | | |     G
    G       C T G C       G A A G G     C
    G       | + | |                 T T
    T       G G C G
      G G          G     TTGGTGGCGCCAGTCGTCGCCGG
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.-

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