The detailed information of tRNA gene sequence


Sequence ID>W142000814
Genome IDJHER01000053
Search identical group
Phylum/ClassBetaproteobacteria
SpeciesBordetella hinzii 4161 [JHER]
Start position on genome 48346
End posion on genome 48441
Amino Acid seC
Anticodon TCA
Upstream region at tRNA start position 
gcccgttcaa
tRNA gene sequence 
GGAAGGCATGCGTGCCCGGTGGCACGGCTGGGCTTCAAACCCAGTTGGGGACGTCAGACG
TTCCCAGGTAGGTTCGACTCCTGCTGCCTTCCGCCA
Downstream region at tRNA end position 
cctccccggc
Secondary structure (Cloverleaf model)
>W142000814	seC	TCA
                   a      GCCA cctccccggc
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     G - C
                     C - G
                     A - T          T C
                    T     C G T C C     A
      C C C        G      | + | | |     G
    G       G T G C       G T A G G     C
    G       | | | |                 T T
    T       C A C G
      G G          G     TTGGGGACGTCAGACGTTCCCAG
                    C - G
                    T - A
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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