The detailed information of tRNA gene sequence


Sequence ID>R05100001
Genome IDAP008207
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr01
Start position on genome 181074
End posion on genome 181157
Amino Acid Leu
Anticodon AAG
Upstream region at tRNA start position 
agatcgagatggtcgactagcaccatgaatatgcaccgaatcccgtcctaaaccgtccctctttcaccaattaattagtactaaatatgcggccaggaaa
tRNA gene sequence 
GTTGAGATGGCCGAGTTGGTCCAAGGCGCCAGATTAAGGTTCTGGTCCGAAAGGGCGTGG
GTTCAAATCCCACTCTTAACATCC
Downstream region at tRNA end position 
cctttttttgggttttctagtagtctactaggtcaagtatcacaataataataatgtacttactactttacttaattagataaagagttcatcgtatttc
Secondary structure (Cloverleaf model)
>R05100001	Leu	AAG
                   a      ATCC cctttttttgggttttctagtagtctactaggtcaagtatcacaataataataatgtacttactactttacttaattagataaagagttcatcgtatttc
                     G - C
                     T - A
                     T - A
                     G + T
                     A - T
                     G - C
                     A - T          T A
                    T     C A C C C     A
    T T G A        G      | | | | |     A
  G         G C C G       G T G G G     C
  G           | | |                 T T
  T         A G G C
    C C A          G     TCCGAAAGGGC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  T       T
                  T       G
                    A A G
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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