The detailed information of tRNA gene sequence


Sequence ID>R05100006
Genome IDAP008207
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr01
Start position on genome 3420334
End posion on genome 3420418
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
tttacaggcccgcttgcttgcgtgccctgacattcctttcggcccatcaaggcttacatttatagtattaaatagctcaattgtgccattcatgcaaaga
tRNA gene sequence 
GTCGATATGTCCGAGTGGTTAAGGAGACAGACTTGAAATCTGTTGGGCTTCGCCCGCGCA
GGTTCGAACCCTGCTGTCGACGCAT
Downstream region at tRNA end position 
ttttttccccttcccgtagtagggtcttgtgctgttgtgccatatttatcccactttattatcttttttttcctttaactagacatgaattccagtcttc
Secondary structure (Cloverleaf model)
>R05100006	Ser	TGA
                   a      GCAT ttttttccccttcccgtagtagggtcttgtgctgttgtgccatatttatcccactttattatcttttttttcctttaactagacatgaattccagtcttc
                     G - C
                     T - A
                     C - G
                     G - C
                     A - T
                     T + G
                     A - T          C A
                    T     C G T C C     A
      T G A        G      | | | | |     G
    G       G C C T       G C A G G     C
    G         | | |                 T T
    T       A G G A
      T A          G     TGGGCTTCGCCCGC
                    A - T
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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