The detailed information of tRNA gene sequence


Sequence ID>R05100013
Genome IDAP008207
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr01
Start position on genome 13479086
End posion on genome 13479162
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
ttatacattcattgagttagtgttggactggaaagttagttgacaacggtatatgcaaagctagcaataaaagaaaaatatattccctttagatacaaca
tRNA gene sequence 
GCTGGAATAGCTCAGTTGGTTAGAGCGTGTGGCTGTTAACCACAAGGTCGGAGGTTCAAG
CCCTCCTTCTAGCGCCT
Downstream region at tRNA end position 
tattttttttattttcaatttcttactcacttttttttcctcaaatcactcactctctttttaatttcttactctcttctttttttctcaaatcacaata
Secondary structure (Cloverleaf model)
>R05100013	Asn	GTT
                   a      GCCT tattttttttattttcaatttcttactcacttttttttcctcaaatcactcactctctttttaatttcttactctcttctttttttctcaaatcacaata
                     G - C
                     C - G
                     T - A
                     G + T
                     G - C
                     A - T
                     A - T          C G
                    T     C C T C C     A
      T G A        A      | | | | |     A
    T       C T C G       G G A G G     C
    G       | | | |                 T T
    G       G A G C
      T T A        G     AGGTC
                    T - A
                    G - C
                    T - A
                    G - C
                    G - C
                  C       A
                  T       A
                    G T T
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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