The detailed information of tRNA gene sequence


Sequence ID>R05100055
Genome IDAP008207
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr01
Start position on genome 39044538
End posion on genome 39044456
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position 
agaagttaaagttgtgttttggagaccgtatcgctgcatttcctttgcgagtatggaggaagtacttattaaatttgaatattcggattattgcatcaac
tRNA gene sequence 
GACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGTCCGAAAGGGCGTGGG
TTCAAATCCCACAGCTGTCACAA
Downstream region at tRNA end position 
tttattctttttcccttttttttcctctgtttttctcatgaaatttcccaagtcttcggccaccaataacacatcgccacctcgcagtcgcatcgtcatc
Secondary structure (Cloverleaf model)
>R05100055	Leu	TAG
                   c      ACAA tttattctttttcccttttttttcctctgtttttctcatgaaatttcccaagtcttcggccaccaataacacatcgccacctcgcagtcgcatcgtcatc
                     G - C
                     A - T
                     C - G
                     A - T
                     G - C
                     T + G
                     T - A          T A
                    T     C A C C C     A
      T G A        G      | | | | |     A
    G       G C C G       G T G G G     C
    G         | | |                 T T
    T       A G G C
      C T A        G     TCCGAAAGGGC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  T       C
                  T       G
                    T A G
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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