The detailed information of tRNA gene sequence


Sequence ID>R05100066
Genome IDAP008207
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr01
Start position on genome 34882905
End posion on genome 34882831
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
ttcgaccgacccggcaaaatatcttctcgatgagtgataggcatcctgcaaagatgattataagtaaattaattaactcgcaaacatttcaagcatcgaa
tRNA gene sequence 
GTCGTTGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGTGACCCGGGTTCGATCC
CCGGCAACGGCGAAA
Downstream region at tRNA end position 
ttgtttttttccctatttttgtttctgcatcttgacattttgctacacttaacgctgtccacaactccacatacgcgttactctatgaagacagacgggt
Secondary structure (Cloverleaf model)
>R05100066	Asp	GTC
                   a      GAAA ttgtttttttccctatttttgtttctgcatcttgacattttgctacacttaacgctgtccacaactccacatacgcgttactctatgaagacagacgggt
                     G - C
                     T + G
                     C - G
                     G - C
                     T - A
                     T - A
                     G - C          C T
                    T     G G C C C     A
      T G A        A      | | | | |     G
    G       T A T G       C C G G G     C
    G       + | | +                 T T
    T       G T A T
      G A          T     TGAC
                    C - G
                    C - G
                    C - G
                    G - C
                    C - G
                  C       C
                  T       A
                    G T C
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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