The detailed information of tRNA gene sequence


Sequence ID>R05100081
Genome IDAP008207
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr01
Start position on genome 3515760
End posion on genome 3515686
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
ggagagacatcgaaatgttttgttttggttcagctactttgcgaagttattttggagtacgctcaatgtaagaatttataaagatcttcgatgtcaaaat
tRNA gene sequence 
GGGTCCATAGCTCAGTGGTAGAGCAATTGACTGCAGATCAATAGGTCACCGGTTCGAACC
CGGTTGGGCCCTATA
Downstream region at tRNA end position 
tataagctgtctttttttccagcaaaaattttgaatttcaccatgagattaaatgcaaattcgatgcccttctgattttttttttcaaattctctaaacc
Secondary structure (Cloverleaf model)
>R05100081	Cys	GCA
                   t      TATA tataagctgtctttttttccagcaaaaattttgaatttcaccatgagattaaatgcaaattcgatgcccttctgattttttttttcaaattctctaaacc
                     G - C
                     G - C
                     G - C
                     T + G
                     C - G
                     C - G
                     A - T          C A
                    T     T G G C C     A
        G A        A      | | | | |     G
      T     C T C G       A C C G G     C
      G     | | | |                 T T
      G     G A G C
        T A        A     AGGTC
                    A - T
                    T - A
                    T - A
                    G - C
                    A - T
                  C       A
                  T       G
                    G C A
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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