The detailed information of tRNA gene sequence


Sequence ID>R05100104
Genome IDAP008217
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr11
Start position on genome 24837722
End posion on genome 24837647
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
tctagcttgaaatttcacgggcttcatcaattcagccatcctcagcggtttggatatgtaactttgaataatttgtcaaggtagcttattaacaatataa
tRNA gene sequence 
GCGCCTGTAGCTCAGTGGATAGAGCGTCTGTTTCCTAAGCAGAAGGCCGTAGGTTCGACC
CCTACCTGGCGCGATT
Downstream region at tRNA end position 
atttatattttttttaatctttactgcttttaaatttttccctgttacttttatgtagtgtaactgggcattggaaatttggaactagacttctttacgc
Secondary structure (Cloverleaf model)
>R05100104	Arg	CCT
                   a      GATT atttatattttttttaatctttactgcttttaaatttttccctgttacttttatgtagtgtaactgggcattggaaatttggaactagacttctttacgc
                     G - C
                     C - G
                     G - C
                     C - G
                     C - G
                     T   T
                     G - C          C C
                    T     C A T C C     A
      T G A        A      | | | | |     G
    G       C T C G       G T A G G     C
    G       | | | |                 T T
    A       G A G C
      T A          G     AGGCC
                    T - A
                    C - G
                    T - A
                    G - C
                    T + G
                  T       A
                  T       A
                    C C T
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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