The detailed information of tRNA gene sequence


Sequence ID>R05100111
Genome IDAP008218
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr12
Start position on genome 311217
End posion on genome 311291
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
aacaaatgctgaaattatttctggactagcacattttctctgtcaccatttgtgtgaaaattggtttaacaaaagagatgataaaacgtctatcaccaaa
tRNA gene sequence 
GGGTGTTTGGTCTAGTGGTATGATTCTCGCTTCGGGTGCGAGAGGTCGTGAGTTCGATTC
TCGCAACACCCCCTT
Downstream region at tRNA end position 
aacgttttgctatttacaactaggtccttctcttacagatgtgatgtactctttctgatgttgcaagtctctgtctttttctctttccttttttttggtc
Secondary structure (Cloverleaf model)
>R05100111	Pro	CGG
                   a      CCTT aacgttttgctatttacaactaggtccttctcttacagatgtgatgtactctttctgatgttgcaagtctctgtctttttctctttccttttttttggtc
                     G - C
                     G - C
                     G - C
                     T - A
                     G - C
                     T - A
                     T - A          T T
                    T     C G C T C     A
        G A        G      | + | | |     G
      T     T C T G       G T G A G     C
      G       | | +                 T T
      G     T G A T
        T A        T     AGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    C - G
                  T       T
                  T       G
                    C G G
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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