The detailed information of tRNA gene sequence


Sequence ID>R05100114
Genome IDAP008218
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr12
Start position on genome 1349214
End posion on genome 1349290
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
gatagtttacaggtaattcgtaccttttccgagattgaatgattttgtcaaataaacgtgaactggttaaataggcgagcacagtcagctaagacagcaa
tRNA gene sequence 
GTCTGGGTGGTGTAGTTGGTTATCACGTTAGTCTCACACACTAAAGGTCCCCAGTTCGAA
CCTGGGCTCAGACACAA
Downstream region at tRNA end position 
acatgttttttccattttttttcaacaatatgaatatttttcttaataacaacagcataattacatgcaaaaaatatttctccataacaataaccatttt
Secondary structure (Cloverleaf model)
>R05100114	Val	CAC
                   a      ACAA acatgttttttccattttttttcaacaatatgaatatttttcttaataacaacagcataattacatgcaaaaaatatttctccataacaataaccatttt
                     G - C
                     T - A
                     C - G
                     T - A
                     G - C
                     G + T
                     G - C          C A
                    T     G G G T C     A
      T G A        G      | | | | |     G
    T       T G T G       C C C A G     C
    G         | | |                 T T
    G       T C A C
      T T A        G     AGGTC
                    T - A
                    T - A
                    A - T
                    G - C
                    T - A
                  C       C
                  T       A
                    C A C
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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