The detailed information of tRNA gene sequence


Sequence ID>R05100116
Genome IDAP008218
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr12
Start position on genome 3871423
End posion on genome 3871498
Amino Acid Arg
Anticodon TCT
Upstream region at tRNA start position 
ttaaatatcgggtgattcatagtttcccgataaatttaatgttaaatactatataatttacctataaaatgagtaaaacggagggcccaggaaagagaag
tRNA gene sequence 
GCGCCTGTGGCCTAATGGATAAGGCGTCTGACTTCTAATCAGACGATTGTGGGTTCGAGT
CCCACCAGGCGTGTCT
Downstream region at tRNA end position 
tcgttttggattctactaatcctattgcaactgttgctcagttggattatggcttataatcgttgtttaatttcaaaacctgagcgtaagttatatttga
Secondary structure (Cloverleaf model)
>R05100116	Arg	TCT
                   g      GTCT tcgttttggattctactaatcctattgcaactgttgctcagttggattatggcttataatcgttgtttaatttcaaaacctgagcgtaagttatatttga
                     G + T
                     C - G
                     G - C
                     C - G
                     C - G
                     T - A
                     G - C          T G
                    T     C A C C C     A
      T A A        G      | | | | |     G
    G       T C C G       G T G G G     C
    G       | | | |                 T T
    A       A G G C
      T A          G     CGATT
                    T - A
                    C - G
                    T - A
                    G - C
                    A - T
                  C       A
                  T       A
                    T C T
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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