The detailed information of tRNA gene sequence


Sequence ID>R05100127
Genome IDAP008218
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr12
Start position on genome 20613271
End posion on genome 20613363
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
tagagtctttctcgctcagtaaagaagagtacgcgcgctacggcttacgcagtggatcttcgggcaaccaacccggcacatccaattccgatcaacaacT
tRNA gene sequence 
GGAGGTATGGCTGAGTGGCTTAAGGCATTGGTTTGCTAAATCGACATACAAGAAGATTGT
ATCATGGGTTCGAATCCCATTTCCTCCGGCA
Downstream region at tRNA end position 
Cggaagtagaacgggcaggcgaaattacgtgagagagaacctcagattgatggagtccgccgtcggacagaatagcactacttagtgactaggagcggag
Secondary structure (Cloverleaf model)
>R05100127	Ser	GCT
                   T      GGCA Cggaagtagaacgggcaggcgaaattacgtgagagagaacctcagattgatggagtccgccgtcggacagaatagcactacttagtgactaggagcggag
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     T   T
                     A - T          T A
                    T     T A C C C     A
      T G A        G      | | | | |     G
    G       G T C G       A T G G G     C
    G         + | |                 T T
    C       A G G C
      T T A        A     CATACAAGAAGATTGTATC
                    T - A
                    T + G
                    G - C
                    G + T
                    T - A
                  T       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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