The detailed information of tRNA gene sequence


Sequence ID>R05100130
Genome IDAP008218
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr12
Start position on genome 20683170
End posion on genome 20683248
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
cttgccaaagaacccctctggggccccgggaagaggaagaaggagatagagcaaaggtctcctctttctgtccgctcttcccggcatgtagagatccgaT
tRNA gene sequence 
GGGCTTATAGTTTAATTGGTTGAAACGTACCGCTCATAACGGTGATATTGTAGGTTCGAG
CCCTACTAAGCCCATCT
Downstream region at tRNA end position 
Gacctgcttaatcaatgactccggtagtcacctgaaccactctctcggatagcccacagcctctcttctggatgcgaaagaagattcgatcaacgtacaa
Secondary structure (Cloverleaf model)
>R05100130	Met	CAT
                   T      ATCT Gacctgcttaatcaatgactccggtagtcacctgaaccactctctcggatagcccacagcctctcttctggatgcgaaagaagattcgatcaacgtacaa
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     T - A
                     A - T          C G
                    T     C A T C C     A
      T A A        A      | | | | |     G
    T       T T T G       G T A G G     C
    G       | | | |                 T T
    G       A A A C
      T T G        G     ATATT
                    T + G
                    A - T
                    C - G
                    C - G
                    G - C
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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