The detailed information of tRNA gene sequence


Sequence ID>R05100135
Genome IDAP008218
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr12
Start position on genome 23120813
End posion on genome 23120887
Amino Acid Pro
Anticodon AGG
Upstream region at tRNA start position 
gatcggccaccggctcatggctcgagctcagcgcagcggctcggctcggctcggataaaatagttttaaataggttgatgtgaagaaagtaatcaaacaa
tRNA gene sequence 
GGGCATTTGGTCTAGTGGTATGATTCTCGCTTAGGGTGCGAGAGGTCCCGAGTTCAATTC
TCGGAATGCCCCAGA
Downstream region at tRNA end position 
ttttattttgaattttgatatattttgccgtctgaaacactattcccaattttaatatctttgcattctgcaattttattcccaattttaatatattttg
Secondary structure (Cloverleaf model)
>R05100135	Pro	AGG
                   a      CAGA ttttattttgaattttgatatattttgccgtctgaaacactattcccaattttaatatctttgcattctgcaattttattcccaattttaatatattttg
                     G - C
                     G - C
                     G - C
                     C - G
                     A - T
                     T - A
                     T - A          T T
                    T     G G C T C     A
        G A        G      | | | | |     A
      T     T C T G       C C G A G     C
      G       | | +                 T T
      G     T G A T
        T A        T     AGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    C - G
                  T       T
                  T       G
                    A G G
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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