The detailed information of tRNA gene sequence


Sequence ID>R05100138
Genome IDAP008218
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr12
Start position on genome 27166874
End posion on genome 27166950
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
gagtcagttgctaagaaaaaaattcagattagtgtactacgtcaaagctactggagccagaatctgtatgaaggtccccgtttctcttgcaaatcaagaa
tRNA gene sequence 
TCCATTGTCGTCTAGTCCGGTTAGGATATCTGGCTTTCACCCAGACGACCCGGGTTCAAA
TCCCGGCAATGGAACAT
Downstream region at tRNA end position 
taatttttgtacattttttctttgtctgctagttttgtttgtgagcagctcacaaaactaacttcaagatttaatttatggcttgttcactttgttgctt
Secondary structure (Cloverleaf model)
>R05100138	Glu	TTC
                   a      ACAT taatttttgtacattttttctttgtctgctagttttgtttgtgagcagctcacaaaactaacttcaagatttaatttatggcttgttcactttgttgctt
                     T - A
                     C - G
                     C - G
                     A - T
                     T - A
                     T - A
                     G - C          T A
                    T     G G C C C     A
    C T G A        C      | | | | |     A
  C         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    T T A          A     CGAC
                    T - A
                    C - G
                    T - A
                    G - C
                    G - C
                  C       C
                  T       A
                    T T C
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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