The detailed information of tRNA gene sequence


Sequence ID>R05100151
Genome IDAP008218
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr12
Start position on genome 20852682
End posion on genome 20852604
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ctccaacctccgcgcctagccgcaaggaacctaaacgctggttctatcccggccaagcaagcaaggtgaaccccggtgggaaagaaagaccagggggaaA
tRNA gene sequence 
AGCGGGGTAGAGGAATTGGTCAACTCATCAGGCTCATGACCTGAAGACTGCAGGTTCGAA
TCCTGTCCCCGCCTAAT
Downstream region at tRNA end position 
Cacgtcagatacttctacgagtcctgatcacctgggtgaaagaatctatgttcaagtcgcctgcctaacaaatagacaactacgtgttctagttgctctg
Secondary structure (Cloverleaf model)
>R05100151	Met	CAT
                   A      TAAT Cacgtcagatacttctacgagtcctgatcacctgggtgaaagaatctatgttcaagtcgcctgcctaacaaatagacaactacgtgttctagttgctctg
                     A   C
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T G T C C     A
      T A A        A      + | | | |     G
    T       G G A G       G C A G G     C
    G         | | |                 T T
    G       A C T C
      T C A        A     AGACT
                    T - A
                    C - G
                    A - T
                    G - C
                    G - C
                  C       A
                  T       G
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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