The detailed information of tRNA gene sequence


Sequence ID>R05100160
Genome IDAP008218
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr12
Start position on genome 5649068
End posion on genome 5648992
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
tgagacgaggattctctatagatagaaaaagacaagaaaattaggatgtggaaaacaagataggaattgtgtacaatgacattgtacaacaatttggaaa
tRNA gene sequence 
AGGGATGTAGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTACAAAATGTCACAGGTTCAAA
TCCTGTCATCCCTACCT
Downstream region at tRNA end position 
attacttctttcttctttataggcagtagtgaggaggtcgattaaagcgggtataactttaattcgtggatactatacgtacgtgagacacattaggagt
Secondary structure (Cloverleaf model)
>R05100160	Pro	TGG
                   a      ACCT attacttctttcttctttataggcagtagtgaggaggtcgattaaagcgggtataactttaattcgtggatactatacgtacgtgagacacattaggagt
                     A - T
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     G - C          T A
                    T     T G T C C     A
      C G A        A      | | | | |     A
    T       C G C G       A C A G G     C
    T       | | | |                 T T
    G       G C G C
      G T A        G     ATGTC
                    T - A
                    T - A
                    T - A
                    G - C
                    T - A
                  T       T
                  T       G
                    T G G
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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