The detailed information of tRNA gene sequence


Sequence ID>R05100161
Genome IDAP008218
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr12
Start position on genome 5648868
End posion on genome 5648792
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
cagtagtgaggaggtcgattaaagcgggtataactttaattcgtggatactatacgtacgtgagacacattaggagtagaaaaggatttgatttttgaaa
tRNA gene sequence 
GCGCTCTTAGTTCAGTTCGGTAGAACGCGGGTCTCCAAAACCCGATGTCGTAGGTTCAAA
TCCTACGGAGCGTGATT
Downstream region at tRNA end position 
ccatctatcttatgtcaaagcagggcaaaataacttaacaaaacaaattgcaattccaatttgacctcctccagaccagagaggagggcaatcgaaaaag
Secondary structure (Cloverleaf model)
>R05100161	Trp	CCA
                   a      GATT ccatctatcttatgtcaaagcagggcaaaataacttaacaaaacaaattgcaattccaatttgacctcctccagaccagagaggagggcaatcgaaaaag
                     G + T
                     C - G
                     G - C
                     C - G
                     T - A
                     C - G
                     T + G          T A
                    T     C A T C C     A
      T G A        A      | | | | |     A
    T       C T T G       G T A G G     C
    C       | | | |                 T T
    G       G A A C
      G T A        G     ATGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    C C A
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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