The detailed information of tRNA gene sequence


Sequence ID>R05100164
Genome IDAP008218
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr12
Start position on genome 3400481
End posion on genome 3400405
Amino Acid Thr
Anticodon AGT
Upstream region at tRNA start position 
tacgtcctacatggaagattatcgtggatgttatattcttcattcactgtgaatggaatattggacttgagatttactttttttttgtggaaaccgaaaa
tRNA gene sequence 
GCTTTCGTAGCTCAGTTGGTTAGAGCACCCGTTTAGTAAGCGGGAGGTCTTGAGTTCGAC
TCTCAACGAAAGCATTT
Downstream region at tRNA end position 
tttacatttcgttattgaattttgttctttattttgtcaaatcttcacttatagttaatcttcatcttgaacttttaatatccaatgcagcatcccctct
Secondary structure (Cloverleaf model)
>R05100164	Thr	AGT
                   a      ATTT tttacatttcgttattgaattttgttctttattttgtcaaatcttcacttatagttaatcttcatcttgaacttttaatatccaatgcagcatcccctct
                     G - C
                     C - G
                     T - A
                     T - A
                     T - A
                     C - G
                     G - C          T C
                    T     A A C T C     A
      T G A        A      | | | | |     G
    T       C T C G       T T G A G     C
    G       | | | |                 T T
    G       G A G C
      T T A        A     AGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    T + G
                  T       A
                  T       A
                    A G T
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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