The detailed information of tRNA gene sequence


Sequence ID>R05100167
Genome IDAP008218
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr12
Start position on genome 1286523
End posion on genome 1286448
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
gcaatttttgatgaatatccgaatgcgactaaacagtttgctgttgctcaagtaaacatctattcataatgattttcttagtttcatttcaaacatcaaa
tRNA gene sequence 
GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTTGCATGCGAGAGGCACGGGGTTCGATC
CCCCGCATCTCCACTC
Downstream region at tRNA end position 
taaatttgtctattttagttctcttctccttttcttttgtctaatttaattttgtgctcttctaaattctagtctaatttagctatgtgttcctctaatt
Secondary structure (Cloverleaf model)
>R05100167	Ala	TGC
                   a      ACTC taaatttgtctattttagttctcttctccttttcttttgtctaatttaattttgtgctcttctaaattctagtctaatttagctatgtgttcctctaatt
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     G - C          C T
                    T     G C C C C     A
      A A A        A      | | | | |     G
    T       C T C G       C G G G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     AGGCA
                    C - G
                    T - A
                    C - G
                    G - C
                    C - G
                  T       T
                  T       A
                    T G C
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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