The detailed information of tRNA gene sequence


Sequence ID>R05100173
Genome IDAP008208
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr02
Start position on genome 5610556
End posion on genome 5610629
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position 
aggattgatattaatttgatctgccgtcgaacagttacaaaggtaagttgatacttttgctcaacagatataatgaaacattgtccttgtaggcatgtaa
tRNA gene sequence 
GCGCATCTGGTGTAGTGGTATCATAGTACCCTCCCACGGTACTGACCAGGGTTCGATTCC
CTGGATGCGCATTA
Downstream region at tRNA end position 
gttctacactcctttacttttttttgtcacaccaatatttcgtccaagatttctctgaagtagtacaggtcatttttttgttagtccaagatttttctga
Secondary structure (Cloverleaf model)
>R05100173	Gly	CCC
                   a      ATTA gttctacactcctttacttttttttgtcacaccaatatttcgtccaagatttctctgaagtagtacaggtcatttttttgttagtccaagatttttctga
                     G - C
                     C - G
                     G - C
                     C - G
                     A - T
                     T - A
                     C - G          T T
                    T     G T C C C     A
        G A        G      | | | | |     G
      T     T G T G       C A G G G     C
      G       | | +                 T T
      G     T C A T
        T A        A     TGAC
                    G - C
                    T - A
                    A - T
                    C - G
                    C - G
                  C       C
                  T       A
                    C C C
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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