The detailed information of tRNA gene sequence


Sequence ID>R05100196
Genome IDAP008208
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr02
Start position on genome 27532896
End posion on genome 27532821
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
tcgtcattggaattccatttcagtgattcttgcagcgagaagaagaacgaattaaaattcaatatattcattagagacatttcattttccatttactata
tRNA gene sequence 
TCCGTTGTAGTCTAGCTGGTTAGGATACTTGGCTCTCACCCAAGAGACCCGGGTTCGAGT
CCCGGCAACGGAAAGT
Downstream region at tRNA end position 
actttttgctggcagtatattttaaactgcaaataattgtctccattagcgtgtttaaactgcaattaattgtcttcattagcgtgttttgcctgcaatt
Secondary structure (Cloverleaf model)
>R05100196	Glu	CTC
                   a      AAGT actttttgctggcagtatattttaaactgcaaataattgtctccattagcgtgtttaaactgcaattaattgtcttcattagcgtgttttgcctgcaatt
                     T - A
                     C - G
                     C - G
                     G - C
                     T - A
                     T - A
                     G - C          T G
                    T     G G C C C     A
      C G A        A      | | | | |     G
    T       T C T G       C C G G G     C
    G       + | | +                 T T
    G       G G A T
      T T A        A     AGAC
                    C - G
                    T - A
                    T - A
                    G - C
                    G - C
                  C       C
                  T       A
                    C T C
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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