The detailed information of tRNA gene sequence


Sequence ID>R05100200
Genome IDAP008208
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr02
Start position on genome 24543275
End posion on genome 24543191
Amino Acid Ser
Anticodon AGA
Upstream region at tRNA start position 
cttctcaacccatacccatgccatattgccatacaggggttgtcacgaaatgtttatctgtaacaatctataaaatttattggaacgcattgtcagcaag
tRNA gene sequence 
GTGGTCGTGCCGGAGTGGTTATCGGGCATGACTAGAAATCATGTGGGCTTTGCCCGCGCA
GGTTCGAATCCTGCCGACCACGTTT
Downstream region at tRNA end position 
ttttttctcatttctgccttctgttttcacaatttccattcttttcgtttctgccatctgctttcaaatttccctttttctttttcgtttctgccttcta
Secondary structure (Cloverleaf model)
>R05100200	Ser	AGA
                   g      GTTT ttttttctcatttctgccttctgttttcacaatttccattcttttcgtttctgccatctgctttcaaatttccctttttctttttcgtttctgccttcta
                     G - C
                     T - A
                     G - C
                     G - C
                     T - A
                     C - G
                     G - C          T A
                    T     C G T C C     A
      T G A        G      | | | | |     G
    G       G G C C       G C A G G     C
    G       + | | |                 T T
    T       T C G G
      T A          G     TGGGCTTTGCCCGC
                    C - G
                    A - T
                    T - A
                    G - C
                    A - T
                  C       A
                  T       A
                    A G A
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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