The detailed information of tRNA gene sequence


Sequence ID>R05100216
Genome IDAP008208
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr02
Start position on genome 8561362
End posion on genome 8561288
Amino Acid Gln
Anticodon TTG
Upstream region at tRNA start position 
aaaaaagctaaaaaggaaatagacaaaatttcctgctttttactgtgcttatggaatataagacagaaatgctatctgcaagcgaccgcatacaacatct
tRNA gene sequence 
GGTCCCATAGTGTAGTGGTTAGCACTCCAGACTTTGAATCTGGCAACCTGGGTTCAAATC
CCTGTGGGACCTTTT
Downstream region at tRNA end position 
ttggggtattgcatagccaattgtttgcagggccaatacatgattcagctgtaatcaatataatatacgagtactgctactgtggtactccaaactgata
Secondary structure (Cloverleaf model)
>R05100216	Gln	TTG
                   t      TTTT ttggggtattgcatagccaattgtttgcagggccaatacatgattcagctgtaatcaatataatatacgagtactgctactgtggtactccaaactgata
                     G - C
                     G - C
                     T - A
                     C - G
                     C - G
                     C - G
                     A - T          T A
                    T     G T C C C     A
      T G A        A      |   | | |     A
    G       T G T G       C T G G G     C
    G       + | | |                 T T
    T       G C A C
      T A          T     CAAC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A
                    T T G
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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