The detailed information of tRNA gene sequence


Sequence ID>R05100246
Genome IDAP008209
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr03
Start position on genome 27270065
End posion on genome 27270141
Amino Acid Gln
Anticodon CTG
Upstream region at tRNA start position 
agtaccattttgcgtcccattttgacgagacgactggcgtgccattttgcgtcctggttcattacagtctaatttggtgacaaacaaacaaggaacaaaA
tRNA gene sequence 
GGTCCCATGGTCTAGCGGTTAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAATC
TCGGTGGGACCTTAA
Downstream region at tRNA end position 
Ttttctcggttttattttctgcctgagcttattgtcctcctcctgattttttgttgttgtctattttctctgccggaaaaatgtatcaaactcgtcgatt
Secondary structure (Cloverleaf model)
>R05100246	Gln	CTG
                   A      TTAA Ttttctcggttttattttctgcctgagcttattgtcctcctcctgattttttgttgttgtctattttctctgccggaaaaatgtatcaaactcgtcgatt
                     G - C
                     G - C
                     T - A
                     C - G
                     C - G
                     C - G
                     A - T          T A
                    T     G G C T C     A
      C G A        G      | | | | |     A
    G       T C T G       C C G A G     C
    G       + | | |                 T T
    T       G G A C
      T A          A     TAAC
                    T + G
                    T - A
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C T G
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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