The detailed information of tRNA gene sequence


Sequence ID>R05100260
Genome IDAP008209
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr03
Start position on genome 36233413
End posion on genome 36233337
Amino Acid Val
Anticodon AAC
Upstream region at tRNA start position 
taaatgcctaattcttttttagaattttcatgatatttgctaattaatatgctcatcatcttcaacacgaaatgtttaactcgcacaatgacaacaaaaa
tRNA gene sequence 
GGTGTCGTGGTGTAGTTGGTTATCACGTCAGTCTAACACACTGAAGGTCTCCGGTTCGAA
CCCGGGCGACGCCATCA
Downstream region at tRNA end position 
taattttactcattttttccacttcaatcttcaatgcatttactacatttttctgttcacttcattagttcaatctatttattttttccacttcaatgca
Secondary structure (Cloverleaf model)
>R05100260	Val	AAC
                   a      ATCA taattttactcattttttccacttcaatcttcaatgcatttactacatttttctgttcacttcattagttcaatctatttattttttccacttcaatgca
                     G - C
                     G - C
                     T + G
                     G - C
                     T - A
                     C - G
                     G - C          C A
                    T     G G G C C     A
      T G A        G      + | | | |     G
    T       T G T G       T C C G G     C
    G         | | |                 T T
    G       T C A C
      T T A        G     AGGTC
                    T - A
                    C - G
                    A - T
                    G - C
                    T - A
                  C       C
                  T       A
                    A A C
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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