The detailed information of tRNA gene sequence


Sequence ID>R05100272
Genome IDAP008209
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr03
Start position on genome 23633057
End posion on genome 23632983
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
aaaccgtgtaaatgtagctattggtgctaaaggttaagacaaacagtaggttacagctaaaatagtacaattaaatttttgaaaaaccaaagttcaggtt
tRNA gene sequence 
GGGTGTTTGGTCTAGTGGTATGATTCTCGCTTCGGGTGCGAGAGGTCGGGAGTTCGATTC
TCCCAACACCCCGTG
Downstream region at tRNA end position 
taagctgtatccatttcttttttcgaaaaaaaaaatttactctccgaactgctctgaaagaattaatcctgtattttcttgctccgaattcatcttttta
Secondary structure (Cloverleaf model)
>R05100272	Pro	CGG
                   t      CGTG taagctgtatccatttcttttttcgaaaaaaaaaatttactctccgaactgctctgaaagaattaatcctgtattttcttgctccgaattcatcttttta
                     G - C
                     G - C
                     G - C
                     T - A
                     G - C
                     T - A
                     T - A          T T
                    T     C C C T C     A
        G A        G      | | | | |     G
      T     T C T G       G G G A G     C
      G       | | +                 T T
      G     T G A T
        T A        T     AGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    C - G
                  T       T
                  T       G
                    C G G
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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