The detailed information of tRNA gene sequence


Sequence ID>R05100300
Genome IDAP008210
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr04
Start position on genome 9249758
End posion on genome 9249832
Amino Acid Val
Anticodon GAC
Upstream region at tRNA start position 
ccataatagtgtggaaagaaagcccggaggaagggtggccttgagtttctcgcccctttgccttaggattcgttaattctctttctcgaggggacgggga
tRNA gene sequence 
AGGGATATAACTCAGCGGTAGAGTGTCACCTTGACGTGGTGGAAGTCATCAGTTCGAGCC
TGATTATCCCTAAAC
Downstream region at tRNA end position 
ccaatgtgagttttttctattttgacttactccccccgccacgatcgaacgggaatggataagaggcttgtgggattgacgtgatagggtagggttggct
Secondary structure (Cloverleaf model)
>R05100300	Val	GAC
                   a      AAAC ccaatgtgagttttttctattttgacttactccccccgccacgatcgaacgggaatggataagaggcttgtgggattgacgtgatagggtagggttggct
                     A - T
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T          C G
                    T     T A G T C     A
        G A        A      | | | | |     G
      C     C T C A       A T C A G     C
      G     | | | |                 T T
      G     G A G T
        T A        G     AAGTC
                    T + G
                    C - G
                    A - T
                    C - G
                    C - G
                  T       T
                  T       G
                    G A C
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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