The detailed information of tRNA gene sequence


Sequence ID>R05100314
Genome IDAP008210
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr04
Start position on genome 21970634
End posion on genome 21970709
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
ccttttagccttcacgtcataatcgaacataaaattgcagtaatcctaatactctgaattttctatatagtatagagcttataggaaaacattgaacaga
tRNA gene sequence 
GCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATC
CACGCTCACCGCAATT
Downstream region at tRNA end position 
ttcattttttttcattttttaatcaaatctctaaccagtaaatttctttagttttcatgtcacagacatgccgattgttttcatctctgaccaattgttt
Secondary structure (Cloverleaf model)
>R05100314	Phe	GAA
                   a      AATT ttcattttttttcattttttaatcaaatctctaaccagtaaatttctttagttttcatgtcacagacatgccgattgttttcatctctgaccaattgttt
                     G - C
                     C - G
                     G - C
                     G - C
                     G   A
                     G - C
                     A - T          C T
                    T     C G C A C     A
      T G A        A      | | | | |     G
    T       C T C G       G C G T G     C
    G       | | | |                 T T
    G       G A G C
      G A          G     AGGTC
                    T - A
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    G A A
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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