The detailed information of tRNA gene sequence


Sequence ID>R05100330
Genome IDAP008210
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr04
Start position on genome 34735075
End posion on genome 34735000
Amino Acid Ala
Anticodon CGC
Upstream region at tRNA start position 
tagcaggaaccaaatagtatctggattagaagaaggtatcacggttaaaggcgttaggaattgttatactacagcattggtagcaactcaccgtcacaac
tRNA gene sequence 
GGGGGTGTAGCTCATATGGTAGAGCGCTCGCTTCGCATGCGAGAGGCACGGTGTTCGATT
CCCCGCACCTCCAATC
Downstream region at tRNA end position 
ttttgatctttttttgatttccattttatcataacttaaaacctgttttttgtttttcattccaccacagcttcatcactcagaacttccatttcatcat
Secondary structure (Cloverleaf model)
>R05100330	Ala	CGC
                   c      AATC ttttgatctttttttgatttccattttatcataacttaaaacctgttttttgtttttcattccaccacagcttcatcactcagaacttccatttcatcat
                     G - C
                     G - C
                     G + T
                     G - C
                     G - C
                     T - A
                     G - C          T T
                    T     G C C C C     A
      A T A        A      | | |   |     G
    T       C T C G       C G G T G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     AGGCA
                    C - G
                    T - A
                    C - G
                    G - C
                    C - G
                  T       T
                  T       A
                    C G C
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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