The detailed information of tRNA gene sequence


Sequence ID>R05100331
Genome IDAP008210
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr04
Start position on genome 33378781
End posion on genome 33378692
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
atatagttagcttacggggtggagcgcaagcaagcgtagcgaatcacatagaattgcccctacctgccagcgcgcagatagatagggcgggcgagcgcag
tRNA gene sequence 
GGATGGATGTCTGAGCGGTTGAAAGAGTCGGTCTTGAAAACCGAAGTATTGATAGGAATA
CCGGGGGTTCGAATCCCTCTCCATCCGCGA
Downstream region at tRNA end position 
ggtcataagttctctcttgccttatctatagataagaacgaatctcctcgactcgactgatatgatggatggtagaaggttgaggttattgtgtgttgat
Secondary structure (Cloverleaf model)
>R05100331	Ser	TGA
                   g      GCGA ggtcataagttctctcttgccttatctatagataagaacgaatctcctcgactcgactgatatgatggatggtagaaggttgaggttattgtgtgttgat
                     G - C
                     G - C
                     A - T
                     T - A
                     G - C
                     G - C
                     A - T          T A
                    T     C T C C C     A
      C G A        G      | + | | |     G
    G       G T C T       G G G G G     C
    G         | | |                 T T
    T       A A G A
      T G A        G     AGTATTGATAGGAATACC
                    T - A
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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