The detailed information of tRNA gene sequence


Sequence ID>R05100336
Genome IDAP008210
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr04
Start position on genome 29202699
End posion on genome 29202624
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
agcacctacagtaaccttcaataatgcgaaatctgagagatgaaacgttacagtagccttcaattacttgtagtcgtttgtgatacttgcaaacaagtcg
tRNA gene sequence 
GTTGCTGTGGTGTAGTGGTTATCACGTCAGTCTTACACACTGAAGGTCTCCAGTTCGATC
CTGGGCAGCAACATCC
Downstream region at tRNA end position 
acttctttttgtgcattggacaataaaactgcactaggccctttttctttttcgcagttgacatacaacagctccaggctcattgaacctttttcttctt
Secondary structure (Cloverleaf model)
>R05100336	Val	TAC
                   g      ATCC acttctttttgtgcattggacaataaaactgcactaggccctttttctttttcgcagttgacatacaacagctccaggctcattgaacctttttcttctt
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G
                     T - A
                     G - C          C T
                    T     G G G T C     A
      T G A        G      + | | | |     G
    G       T G T G       T C C A G     C
    G         | | |                 T T
    T       T C A C
      T A          G     AGGTC
                    T - A
                    C - G
                    A - T
                    G - C
                    T - A
                  C       C
                  T       A
                    T A C
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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