The detailed information of tRNA gene sequence


Sequence ID>R05100347
Genome IDAP008210
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr04
Start position on genome 20659838
End posion on genome 20659756
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position 
gagtgcatcgaatgaaaataccatttggtgtcacctgtggcaaattatgagtggtgcattagagtattatacacgaaaagtgaaaagataatgcagctgc
tRNA gene sequence 
GACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGTCCGTAAGGGCGTGGG
TTCAAATCCCACAGCTGTCAAAT
Downstream region at tRNA end position 
tttttgttttactttctcttgtttttaaaggtgttgatttttttattctcactttatctcccattattttattttatactttctcttattgtttgtcaac
Secondary structure (Cloverleaf model)
>R05100347	Leu	TAG
                   c      AAAT tttttgttttactttctcttgtttttaaaggtgttgatttttttattctcactttatctcccattattttattttatactttctcttattgtttgtcaac
                     G - C
                     A - T
                     C - G
                     A - T
                     G - C
                     T + G
                     T - A          T A
                    T     C A C C C     A
      T G A        G      | | | | |     A
    G       G C C G       G T G G G     C
    G         | | |                 T T
    T       A G G C
      C T A        G     TCCGTAAGGGC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  T       C
                  T       G
                    T A G
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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