The detailed information of tRNA gene sequence


Sequence ID>R05100360
Genome IDAP008210
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr04
Start position on genome 9227972
End posion on genome 9227894
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
cgctacccgctccattctgtataaaataactattctatttgtctagacatggtagaggcctgtattcaacctttttcgtccaccggtttccagcgctccG
tRNA gene sequence 
AGCGGAGTAGAGCAGTTTGGTAGCTCACGAGGCTCATAACCTTGAGGTCACGGGTTCGAT
TCCCGTCTCCGCACTTA
Downstream region at tRNA end position 
Gcagtctgtataaaaggactattctatttgtctagatatggtagagggctgggtggttgggcggtatccaaccctttttattcattagttcccgacccta
Secondary structure (Cloverleaf model)
>R05100360	Met	CAT
                   G      CTTA Gcagtctgtataaaaggactattctatttgtctagatatggtagagggctgggtggttgggcggtatccaaccctttttattcattagttcccgacccta
                     A   A
                     G - C
                     C - G
                     G - C
                     G - C
                     A - T
                     G - C          T T
                    T     T G C C C     A
      T G A        A      | | | | |     G
    T       C G A G       A C G G G     C
    T       | | | |                 T T
    G       G C T C
      G T A        A     AGGTC
                    C - G
                    G + T
                    A - T
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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