The detailed information of tRNA gene sequence


Sequence ID>R05100400
Genome IDAP008211
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr05
Start position on genome 26510265
End posion on genome 26510190
Amino Acid Lys
Anticodon CTT
Upstream region at tRNA start position 
atacacgttttaggtggatgcggttaacattgccatgacatggcaatagtgacacagatgactatataatgagaactttgttgacaatgtattgaacaaa
tRNA gene sequence 
GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC
CCCACGGTGGGCGTAC
Downstream region at tRNA end position 
attccttttgctagtttaaaactagagactttgatggtctaaagcttccgatgtgtaggaaacatgaattaccactgggaatataagtctattttgcatc
Secondary structure (Cloverleaf model)
>R05100400	Lys	CTT
                   a      GTAC attccttttgctagtttaaaactagagactttgatggtctaaagcttccgatgtgtaggaaacatgaattaccactgggaatataagtctattttgcatc
                     G - C
                     C - G
                     C - G
                     C - G
                     G + T
                     T + G
                     C - G          C G
                    T     C A C C C     A
      T G A        A      | | | | |     G
    C       C T C G       G T G G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     TGGTC
                    C - G
                    A - T
                    A - T
                    G - C
                    G - C
                  C       A
                  T       A
                    C T T
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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