The detailed information of tRNA gene sequence


Sequence ID>R05100404
Genome IDAP008211
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr05
Start position on genome 23239936
End posion on genome 23239862
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
ctgtcctcgatcccttcttcctttgctttgcagagtcaagcccccgaagcttagatagtttgtggatagaatgtgatgaatctgctcgtgggccgtacaa
tRNA gene sequence 
GCGTTCGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTC
CCGGCGAACGCATTT
Downstream region at tRNA end position 
cttttgcgagcgagttcagagagtgatttcagtggtcaactactgaatttttttgactcttttcagacgaacccaaactaccagctagtacaagttatga
Secondary structure (Cloverleaf model)
>R05100404	Gly	TCC
                   a      ATTT cttttgcgagcgagttcagagagtgatttcagtggtcaactactgaatttttttgactcttttcagacgaacccaaactaccagctagtacaagttatga
                     G - C
                     C - G
                     G - C
                     T - A
                     T - A
                     C - G
                     G - C          T C
                    T     G G C C C     A
      C A A        A      | | | | |     G
    G       C C T G       C C G G G     C
    G       | | | +                 T T
    T       G G A T
      T A          A     AGAC
                    A - T
                    T - A
                    T - A
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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