The detailed information of tRNA gene sequence


Sequence ID>R05100407
Genome IDAP008211
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr05
Start position on genome 22675204
End posion on genome 22675127
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
ataacctgtgtgcttctgtggtctggaacctgaagaaaacttgagccacatttcagatgtaaattactactagagtatttatatttgtaaaatgccaggT
tRNA gene sequence 
GCCCGTCTAGCTCAGTCGGTAGAACGCAAGGCTTTTAACCTTGTGGTCGTGGGTTCGAGC
CCCACGGTGGGCGATT
Downstream region at tRNA end position 
Cttttgtttttctcgactcattatgttctatgaccagaaatcagatatcagaacatgttattttctctctcgattttttattttcagaactacgccttgt
Secondary structure (Cloverleaf model)
>R05100407	Lys	TTT
                   T      GATT Cttttgtttttctcgactcattatgttctatgaccagaaatcagatatcagaacatgttattttctctctcgattttttattttcagaactacgccttgt
                     G - C
                     C - G
                     C - G
                     C - G
                     G + T
                     T + G
                     C - G          C G
                    T     C A C C C     A
      T G A        A      | | | | |     G
    C       C T C G       G T G G G     C
    G       | |   |                 T T
    G       G A A C
      T A          G     TGGTC
                    C - G
                    A - T
                    A - T
                    G - C
                    G - C
                  C       A
                  T       A
                    T T T
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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