The detailed information of tRNA gene sequence


Sequence ID>R05100409
Genome IDAP008211
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr05
Start position on genome 20984423
End posion on genome 20984337
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
gggtagaagaataattcgtcgaatgaaatgcaacttgtacaaatgaacaggtcagtaaacatttccgttaaatatttctgaaaacaacttgtagcgaagC
tRNA gene sequence 
GTCGATATGTCCGAGTGGTTAAGGAGACAGACTCGAAATCTGTTGGGCTTTGCCTGCGCA
GGTTCGAATCCTGCTGTCGACGCTT
Downstream region at tRNA end position 
Ccattttttcatttttgttccacgaattcgggtgcgaagctgatcgcgcgaaggcacgttgcagatagaagaatttttttcatttttaaatttttttctt
Secondary structure (Cloverleaf model)
>R05100409	Ser	CGA
                   C      GCTT Ccattttttcatttttgttccacgaattcgggtgcgaagctgatcgcgcgaaggcacgttgcagatagaagaatttttttcatttttaaatttttttctt
                     G - C
                     T - A
                     C - G
                     G - C
                     A - T
                     T + G
                     A - T          T A
                    T     C G T C C     A
      T G A        G      | | | | |     G
    G       G C C T       G C A G G     C
    G         | | |                 T T
    T       A G G A
      T A          G     TGGGCTTTGCCTGC
                    A - T
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A
                    C G A
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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