The detailed information of tRNA gene sequence


Sequence ID>R05100416
Genome IDAP008211
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr05
Start position on genome 13007633
End posion on genome 13007543
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
atatcgaaaagggatttgtatttgagatgtttctagaggttagtgagtcatttcgtatggctatgttctatttgtaggaataaaataaggattaggctgt
tRNA gene sequence 
GGAGAGATGGCTGAGTGGTTGATAGCTCCGGTCTTGAAAACCGGTATAGTTCTAGGAACT
ATCGAGGGTTCGAATCCCTCTCTCTCCTTTT
Downstream region at tRNA end position 
gctttcctctctcttttcttttgcgtattgaatacatttgtttctttatttgttttttttgttctgtccccttatctttctttcatagaaaggaatgaat
Secondary structure (Cloverleaf model)
>R05100416	Ser	TGA
                   t      TTTT gctttcctctctcttttcttttgcgtattgaatacatttgtttctttatttgttttttttgttctgtccccttatctttctttcatagaaaggaatgaat
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     C T C C C     A
      T G A        G      | | | | |     G
    G       G T C G       G A G G G     C
    G       + | | |                 T T
    T       T A G C
      T G A        T     TATAGTTCTAGGAACTATC
                    C - G
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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