The detailed information of tRNA gene sequence


Sequence ID>R05100438
Genome IDAP008212
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr06
Start position on genome 24832100
End posion on genome 24832014
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
actttgtttttaataaaagaaaaggaaaaaggacttgttaaggtggagcagatggttagctgtgaataataaaattaaccggaaataacgctacataacg
tRNA gene sequence 
GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG
TGGGTTCAAATCCCACTTCTGACATTT
Downstream region at tRNA end position 
tgttttttgttatccgtatttattttatttagtcgagagtttcatacaaaccaaaattctccgaaacgaattcatatcgacagctcaaaaattttcagga
Secondary structure (Cloverleaf model)
>R05100438	Leu	CAA
                   g      ATTT tgttttttgttatccgtatttattttatttagtcgagagtttcatacaaaccaaaattctccgaaacgaattcatatcgacagctcaaaaattttcagga
                     G - C
                     T - A
                     C - G
                     A - T
                     G - C
                     G + T
                     A - T          T A
                    T     C A C C C     A
      T G A        G      | | | | |     A
    G       G C C G       G T G G G     C
    G         | | |                 T T
    T       A G G C
      C T A        G     TCCTCTAACGAGGGC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  C       T
                  T       G
                    C A A
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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