The detailed information of tRNA gene sequence


Sequence ID>R05100491
Genome IDAP008214
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr08
Start position on genome 4399960
End posion on genome 4400034
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
gcgtaaaatccgttgctcactattcgtgtacaaggcgtatttctgatttcgatggttttagttgcttaattaatgttaaattgaacatcttaacaaggcc
tRNA gene sequence 
GGATCCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCGATTC
ACGTCGGGTTCAAAA
Downstream region at tRNA end position 
tccccgaaccaagtccggaaatattttttttatttttccaacaaaatccttttatccatttatccattatagttttcagtgctacttttattttttttag
Secondary structure (Cloverleaf model)
>R05100491	Trp	CCA
                   c      AAAA tccccgaaccaagtccggaaatattttttttatttttccaacaaaatccttttatccatttatccattatagttttcagtgctacttttattttttttag
                     G - C
                     G + T
                     A - T
                     T + G
                     C - G
                     C - G
                     G - C          T T
                    T     T G C A C     A
        A A        G      + | | | |     G
      T     C G C G       G C G T G     C
      G     | | | |                 T T
      G     G C G C
        T A        G     AGGTT
                    T - A
                    C - G
                    T - A
                    G - C
                    A - T
                  C       A
                  T       G
                    C C A
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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