The detailed information of tRNA gene sequence


Sequence ID>R05100494
Genome IDAP008214
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr08
Start position on genome 5848458
End posion on genome 5848534
Amino Acid Val
Anticodon AAC
Upstream region at tRNA start position 
cggcagagaattgaaagatcgattggaaaagacaagagaagatgatcatgaactcatcagacgaagatcgaattgggaagaggagatgattgaacagctc
tRNA gene sequence 
GGTGTCGTGGTGTAGTTGGTTATCACGTCAGTCTAACACACTGAAGGTCTCCGGTTCGAG
TCCGGGCGACGCCATTT
Downstream region at tRNA end position 
tattttttgtttcattgaagtataaatcttcgtgttatgttttattccatctttttcatcaaaatctgaatctgtgtttatgttttattcatcattttca
Secondary structure (Cloverleaf model)
>R05100494	Val	AAC
                   c      ATTT tattttttgtttcattgaagtataaatcttcgtgttatgttttattccatctttttcatcaaaatctgaatctgtgtttatgttttattcatcattttca
                     G - C
                     G - C
                     T + G
                     G - C
                     T - A
                     C - G
                     G - C          T G
                    T     G G G C C     A
      T G A        G      + | | | |     G
    T       T G T G       T C C G G     C
    G         | | |                 T T
    G       T C A C
      T T A        G     AGGTC
                    T - A
                    C - G
                    A - T
                    G - C
                    T - A
                  C       C
                  T       A
                    A A C
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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