The detailed information of tRNA gene sequence


Sequence ID>R05100514
Genome IDAP008214
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr08
Start position on genome 27159876
End posion on genome 27159950
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
ttcaagctacggagagattctattcaacaaattgtgcatcttgtcgacacaaatataaaataagtataaattagaaatacacaatcattcaacaagaagc
tRNA gene sequence 
GCCCTTATAGCTCAGTGGTAGAGCGTCAGTCTTGTAAACTGAAGGTCCGTAGTTCGATCC
TGCGTGGGGGCATTT
Downstream region at tRNA end position 
tttaaatttttttttgtcacctgtcttcctttttttcccctcttttgatcattgttcaaacctctagccccaattgaatgatttaattctagactttcac
Secondary structure (Cloverleaf model)
>R05100514	Thr	TGT
                   c      ATTT tttaaatttttttttgtcacctgtcttcctttttttcccctcttttgatcattgttcaaacctctagccccaattgaatgatttaattctagactttcac
                     G - C
                     C - G
                     C - G
                     C - G
                     T + G
                     T + G
                     A - T          C T
                    T     G C G T C     A
        G A        A      | | + | |     G
      T     C T C G       C G T A G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    T - A
                    C - G
                    A - T
                    G - C
                    T - A
                  C       A
                  T       A
                    T G T
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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