The detailed information of tRNA gene sequence


Sequence ID>R05100520
Genome IDAP008214
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr08
Start position on genome 22882762
End posion on genome 22882676
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
agcgcggaacagactcagcactaaacgcacccgggcgtcctgcgtactactacgaagttactccatacttgcttgttctttcgtcaccatatgccataaT
tRNA gene sequence 
GACGCTTTGGCCGAGTGGTTAAGGCGTGTGCCTGCTAAGTACATGGGGTTTCCCCGCGAG
AGTTCGAATCTCTCAGGCGTCGCTT
Downstream region at tRNA end position 
Ctttttttttcttttgggaaaaaatggatgttttgtccgttagaaatggatgcttttttttttcccgctgatcagattttgggacattgtaattcttaaa
Secondary structure (Cloverleaf model)
>R05100520	Ser	GCT
                   T      GCTT Ctttttttttcttttgggaaaaaatggatgttttgtccgttagaaatggatgcttttttttttcccgctgatcagattttgggacattgtaattcttaaa
                     G - C
                     A - T
                     C - G
                     G - C
                     C - G
                     T + G
                     T - A          T A
                    T     C T C T C     A
      T G A        G      | | | | |     G
    G       G C C G       G A G A G     C
    G         | | |                 T T
    T       A G G C
      T A          G     TGGGGTTTCCCCGC
                    T - A
                    G - C
                    T - A
                    G + T
                    C - G
                  C       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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