The detailed information of tRNA gene sequence


Sequence ID>R05100539
Genome IDAP008215
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr09
Start position on genome 19127017
End posion on genome 19127095
Amino Acid Ile
Anticodon AAT
Upstream region at tRNA start position 
accaggtgtgtgctcctatttgaattttttattttgaattatactcctatttgaatttaagtcttggtatttttggaaatagtttgacgcagctaccaaT
tRNA gene sequence 
GGCCTATTAGCTCAGCTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCAGGTTCGAG
ACCTGCATGGGCCAATT
Downstream region at tRNA end position 
Ctttttttttatttttttttcaatatttttgggtacatagtaattttttcttacattcttttgttattatctaaaaaaattcttttgtacattaattttt
Secondary structure (Cloverleaf model)
>R05100539	Ile	AAT
                   T      AATT Ctttttttttatttttttttcaatatttttgggtacatagtaattttttcttacattcttttgttattatctaaaaaaattcttttgtacattaattttt
                     G - C
                     G - C
                     C - G
                     C - G
                     T + G
                     A - T
                     T - A          A G
                    T     C G T C C     A
      C G A        A      | | | | |     G
    T       C T C G       G C A G G     C
    G       | | | |                 T T
    G       G A G C
      T T A        G     AGGTC
                    T - A
                    C - G
                    G - C
                    T + G
                    G - C
                  C       A
                  T       A
                    A A T
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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