The detailed information of tRNA gene sequence


Sequence ID>R05100543
Genome IDAP008215
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr09
Start position on genome 22743719
End posion on genome 22743793
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
agtgtcaggtgaggattttgttggatccgcacctgctttcaagagatcctattttttgacagttttgggcagtatttctgacactcgaagtgcgtgagct
tRNA gene sequence 
GCTTCCGTAGCATAGTGGTAGTGCGTTCGCTTCGTAAGCGAAAGGTCGCGAGTTCGATCC
TCGCCGGGAGCTCGA
Downstream region at tRNA end position 
tccctttctttttttgtcagtcttgttcatagtagccactcattctggttacaggcagtcatgatttgccccaaaacacaactttcagaagccatggtaa
Secondary structure (Cloverleaf model)
>R05100543	Thr	CGT
                   t      TCGA tccctttctttttttgtcagtcttgttcatagtagccactcattctggttacaggcagtcatgatttgccccaaaacacaactttcagaagccatggtaa
                     G - C
                     C - G
                     T - A
                     T + G
                     C - G
                     C - G
                     G - C          C T
                    T     C G C T C     A
        G A        A      | | | | |     G
      T     T A C G       G C G A G     C
      G     + | | |                 T T
      G     G T G C
        T A        G     AGGTC
                    T - A
                    T - A
                    C - G
                    G - C
                    C - G
                  T       A
                  T       A
                    C G T
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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